Class PwmAndSeqs

java.lang.Object
org.snpeff.motif.Pwm
org.snpeff.motif.PwmAndSeqs

public class PwmAndSeqs extends Pwm
Create a DNA motif count matrix and also count the number of sequences in that contribute to this motif.
Author:
pcingola
  • Constructor Details

    • PwmAndSeqs

      public PwmAndSeqs(int len)
  • Method Details

    • toString

      public String toString()
      Overrides:
      toString in class Pwm
    • updateCounts

      public void updateCounts(String dna, int inc, long rsId)
      Update counts matrix.
      Parameters:
      dna -