Package org.snpeff.gsa
Class PvaluesList
java.lang.Object
org.snpeff.gsa.ScoreList
org.snpeff.gsa.PvaluesList
A list of pvalues (i.e. values in the range [0, 1])
- Author:
- pcingola
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Nested Class Summary
Nested classes/interfaces inherited from class org.snpeff.gsa.ScoreList
ScoreList.ScoreSummary
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Field Summary
Fields inherited from class org.snpeff.gsa.ScoreList
SIGNIFICANCE_LEVEL_95
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
add
(double score) Add a p-value to the listprotected double
Methods inherited from class org.snpeff.gsa.ScoreList
avg, avgLargestTop, avgSmallestTop, cdf, cdfUpper, chiSquareCDFComplementary, getGeneId, getScore, max, min, pValueBonferroni, pValueFdr, pValueFisherChi2, pValueSimes, pValueZScore, quantile, score, setGeneId, size, sum, toString
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Constructor Details
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PvaluesList
public PvaluesList()
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Method Details
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add
public void add(double score) Add a p-value to the list -
getDefaultValue
protected double getDefaultValue()- Overrides:
getDefaultValue
in classScoreList
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