Class GeneCountByTypeTable

java.lang.Object
org.snpeff.stats.GeneCountByTypeTable
All Implemented Interfaces:
Serializable, Iterable<String>

public class GeneCountByTypeTable extends Object implements Iterable<String>, Serializable
Count for each 'type' and 'gene'. Tries to avoid multiple counting by comparing to latest variants. WARNING: This strategy does not work if changeEffect are out of order.
Author:
pcingola
See Also:
  • Field Details

    • GENE_CPG_NUM_BINS

      public static int GENE_CPG_NUM_BINS
    • debug

      public static boolean debug
  • Constructor Details

    • GeneCountByTypeTable

      public GeneCountByTypeTable()
  • Method Details