Class PdbUtil

java.lang.Object
org.snpeff.pdb.PdbUtil

public class PdbUtil extends Object
  • Constructor Summary

    Constructors
    Constructor
    Description
     
  • Method Summary

    Modifier and Type
    Method
    Description
    static List<org.biojava.nbio.structure.AminoAcid>
    aminoAcids(org.biojava.nbio.structure.Chain chain)
    Get all AAs in a chain
    static double
    distanceMin(org.biojava.nbio.structure.AminoAcid aa1, org.biojava.nbio.structure.AminoAcid aa2)
    Minimum distance between all atoms in two amino acids

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
  • Constructor Details

    • PdbUtil

      public PdbUtil()
  • Method Details

    • aminoAcids

      public static List<org.biojava.nbio.structure.AminoAcid> aminoAcids(org.biojava.nbio.structure.Chain chain)
      Get all AAs in a chain
    • distanceMin

      public static double distanceMin(org.biojava.nbio.structure.AminoAcid aa1, org.biojava.nbio.structure.AminoAcid aa2)
      Minimum distance between all atoms in two amino acids