Package org.snpeff.binseq.indexer
Class OverlapFilterCompareAllAll
java.lang.Object
org.snpeff.binseq.indexer.OverlapFilterCompareAllAll
- All Implemented Interfaces:
OverlapFilter<DnaSequenceId>
Only allow overlaps between sequences mapped to same/different partition
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionboolean
considerOverlap
(DnaSequenceId seq1, DnaSequenceId seq2) Consider overlap between two sequences?
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Constructor Details
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OverlapFilterCompareAllAll
public OverlapFilterCompareAllAll()
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Method Details
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considerOverlap
Consider overlap between two sequences?- Specified by:
considerOverlap
in interfaceOverlapFilter<DnaSequenceId>
- Parameters:
seq1
-seq2
-- Returns:
- true if sequences should be considered for overlapping
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