Package org.snpeff
Class RegulationFileConsensus
java.lang.Object
org.snpeff.RegulationFileConsensus
Create a regulation consensus from a regulation file.
- Author:
- pcingola
-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
consensus
(Regulation reg) Add to consensusgetRegulationList
(String regType) Get regulation list by type (or create a new list)void
readFile
(RegulationFileIterator regulationFileIterator) Read a file and add all regulation intervalsvoid
save()
Save databases (one file per regType)void
setOutputDir
(String outputDir) void
setVerbose
(boolean verbose)
-
Constructor Details
-
RegulationFileConsensus
public RegulationFileConsensus()
-
-
Method Details
-
consensus
Add to consensus -
getRegTypes
-
getRegulationList
Get regulation list by type (or create a new list) -
readFile
Read a file and add all regulation intervals -
save
public void save()Save databases (one file per regType) -
setOutputDir
-
setVerbose
public void setVerbose(boolean verbose)
-