Package org.snpeff.interval
Class ProteinStructuralInteractionLocus
java.lang.Object
org.snpeff.interval.Interval
org.snpeff.interval.Marker
org.snpeff.interval.ProteinInteractionLocus
org.snpeff.interval.ProteinStructuralInteractionLocus
- All Implemented Interfaces:
Serializable
,Cloneable
,Comparable<Interval>
,TxtSerializable
Protein interaction: An amino acid that is "in contact" with another amino acid.
This can be either within the same protein or interacting with another protein.
Evidence form PDB crystallized structures
- Author:
- pablocingolani
- See Also:
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Field Summary
Fields inherited from class org.snpeff.interval.ProteinInteractionLocus
debug
Fields inherited from class org.snpeff.interval.Interval
chromosomeNameOri, end, id, parent, start, strandMinus
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Constructor Summary
ConstructorsConstructorDescriptionProteinStructuralInteractionLocus
(Transcript parent, int start, int end, String id) -
Method Summary
Methods inherited from class org.snpeff.interval.ProteinInteractionLocus
cloneShallow, factory, variantEffect
Methods inherited from class org.snpeff.interval.Marker
adjust, apply, applyDel, applyDup, applyIns, applyMixed, clone, codonTable, compareTo, compareToPos, distance, distanceBases, getParent, getType, idChain, idChain, idChain, includes, intersect, isAdjustIfParentDoesNotInclude, isDeferredAnalysis, isShowWarningIfParentDoesNotInclude, minus, query, query, readTxt, serializeParse, serializeSave, shouldApply, toString, union, variantEffectNonRef
Methods inherited from class org.snpeff.interval.Interval
equals, findParent, getChromosome, getChromosomeName, getChromosomeNameOri, getChromosomeNum, getEnd, getGenome, getGenomeName, getId, getStart, getStrand, hashCode, intersects, intersects, intersects, intersects, intersectSize, isCircular, isSameChromo, isStrandMinus, isStrandPlus, isValid, setChromosomeNameOri, setEnd, setId, setParent, setStart, setStrandMinus, shiftCoordinates, size, toStr, toStringAsciiArt, toStrPos
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Constructor Details
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ProteinStructuralInteractionLocus
public ProteinStructuralInteractionLocus() -
ProteinStructuralInteractionLocus
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