Package org.snpeff.fastq
package org.snpeff.fastq
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ClassesClassDescriptionSplit a fastq into N filesSimple maipulation of fastq sequencesTrim fastq sequence when quality drops below a threshold The resulting sequence has to ba at least 'minBases'Trim fastq sequence when: - Median quality drops below a threshold (mean is calculated every 2 bases instead of every base) - Sequence length is at least 'minBases' From Adrian Platts ...Also the sliding window was not every base.Trim fastq sequence when median quality drops below a threshold